Juncaceae Phylogeny Group

Published Work

Záveská Drábková L. & Vlček Č. 2010. Molecular phylogeny of the genus Luzula DC. (Juncaceae, Monocotyledones) based on plastome and nuclear ribosomal regions: A case of incongruence, incomplete lineage sorting and hybridisation. Mol. Phylogenet. Evol. In Press.

Záveská Drábková L. & Vlček Č. 2009. Mitochondrial DNA variation within Juncaceae: Comparison of impact of organelles regions on phylogeny. Pl. Syst. Evol. 169-186.

Drábková L. and Vlček Č. 2007: The phylogenetic position of Oxychloë (Juncaceae): evidence from one nuclear, three plastid regions and morphology. - Taxon 56/1: 95-102.

Drábková L., Kirschner J. and Vlček Č. 2006: Phylogenetic relationships within Luzula DC. and Juncus L. (Juncaceae): A comparison of phylogenetic signals of trnL-trnF intergenic spacer, trnL intron and rbcL plastome sequence data. – Cladistics 22/2:132-143.

Drábková L., Kirschner J., Vlček Č. and Pačes, V. 2004: TrnL-trnF intergenic spacer and trnL intron define clades within Luzula and Juncus (Juncaceae).- J. Mol. Evol. 59(1): 1-10.

Drábková L. and Kirschner J. 2004: Juncus uruguensis Griseb. - a member of section Juncotypus (Juncaceae, subg. Agathryon).- Nord. J. Bot. 22(6): 687-691.

Drábková L., Kirschner J., Seberg, O., Petersen, G. and Vlček Č. 2003: Phylogeny of the Juncaceae based on rbcL sequences, with special emphasis on Luzula DC. and Juncus L.-  Pl. Syst. Evol. 240(1-4): 133-147.

Drábková L., Kirschner J. and Vlček Č. 2002: Historical herbarium specimens in molecular taxonomy of the Juncaceae: A comparison of DNA extraction and amplification protocols.- Plant Molecular Biology Reporter Vol. 20/2: 161-175.

Kristiansen K., Cilieborg M., Drábková L., Jørgensen T., Petersen G. and Seberg O. 2004. DNA taxonomy – the riddle of Oxychloë. –Syst. Bot. 30(2): 284-289.

Kirschner J. and Drábková L. 2007. Proposal to conserve the name Juncus micranthus Schrad. ex E. Mey. against J. micranthus Desv. (Juncaceae), with a note on J. validus. - Taxon 56/2: 602-603.

Kirschner J. , Rejdali M. and Drábková L. 2004: A new Juncus of the sect. Tenageia from Marocco. – Preslia 76: 76: 371-376.

Kirschner J. et al. 2002a: Juncaceae 1: Rostkovia to Luzula, Species Plantarum: Flora of the World Part 6: 1-237. ABRS, Canberra, Australia.

Kirschner J. et al. 2002b: Juncaceae 2: Juncus subg. Juncus, Species Plantarum: Flora of the World Part 7: 1-237. ABRS, Canberra, Australia.

Kirschner J. et al. 2002c: Juncaceae 3: Juncus subg. Agathryon, Species Plantarum: Flora of the World Part 8: 1-237. ABRS, Canberra, Australia.

Kirschner J. 1996: Luzula sect. Luzula (Juncaceae) in Spain. - Pl. Syst. Evol. 200: 1-11.

Kirschner J. & Rich T. C. G. 1996: Luzula multiflora subsp. hibernica, a new tetraploid taxon of Luzula sect. Luzula (Juncaceae) from Ireland. - Watsonia, London, 21: 89-97.

Kirschner J. 1995. Allozyme analysis of Luzula sect. Luzula (Juncaceae) in Ireland: Evidence of the origin of tetraploids. - Folia Geobot. Phytotax. 30: 283-290.  

Kirschner J. & Lippert  W. 1995: Ein vorläufiger Überblick über Luzula sect. Luzula in Bayern. - Ber. Bayer. Bot. Ges., 65: 7-26.

Kirschner J. 1993: Taxonomic survey of Luzula sect. Luzula (Juncaceae) in Europe. - Folia Geobot. Phytotax, Praha, 28: 141-182.

Kirschner J. & Rich T. C. G. 1993: A note on Luzula section Luzula (Juncaceae) in Ireland with special reference to Luzula pallidula Kirschner. - Ir. Nat. J., 24(7): 297-298.  

Kirschner J. 1992: Karyological differentiation of Luzula sect. Luzula in Europe. - Thaiszia, Košice, 2: 11-39. Kirschner J. 1992: A Luzula sect. Luzula puzzle near Sofia, Bulgaria. - Ann. Bot. Fennici 29: 235-241.

Kirschner J. 1991: An account of natural hybridization within Luzula sect. Luzula (Juncaceae) in Europe. - Preslia, Praha, 63: 81-112.

Kirschner J. 1990: Luzula multiflora and allied speceis (Juncaceae): a nomeclatural study. - Taxon, 39: 106-114.

Kirschner J. 1989: Bika klasnatá - Luzula spicata (L.) DC. In: Slavík B. et al. (red.),   Vybrané ohrožené druhy flóry  ČSR. - Studie ČSAV, Praha,  10: 11-23.

Kirschner J. , Engellskj T. & Knaben G. S. 1988: Luzula alpina Hoppe, a neglected Alpine species. - Preslia, Praha, 60: 97-108.

Kirschner J. 1982: Poznámky k určování zástupců komplexu Luzula campestris-multiflora (L. campestris agg.) v ČSSR. (Notes on the determination of the members of the Luzula campestris-multiflora complex (L. campestris agg.) in Czechoslovakia. - Zpr. Čs. Bot. Společ., Praha, 17: 25-37.  

Kirschner J. 1979: A new species of the Luzula campestris-multiflora Complex in Central Europe. - Folia Geobot. Phytotax., Praha 14: 431-435.

Kirschner J. & Křísa B. 1979: Notes on the taxonomy and cytology on the genus Luzula in the West Caucasus. - Preslia, Praha, 51: 333-339.

Köbele, C. P. et Tillich, H.-J. 2002: The aberrant inflorescence of Luzula elegans Lowe (Juncaceae) compared to other Luzula  species. – Sendtnera 8: 77-84.

Köbele, C. P. et Tillich, H.-J. 2001: Die Infloreszenzen der Juncaceae.- Sendtnera 7: 137-161.

 

List of samples used for molecular phylogeny work

(Underlined taxa was not sequenced in the Juncaceae Phylogeny Project)

 

 

mtDNA

cpDNA

cpDNA

cpDNA

nrDNA

GENUS, SUBGENUS, Section

Species

GenBank accession no atpA

GenBank accession no trnL-trnF

GenBank accession no rbcL

GenBank accession no matK

GenBank accession no ITS1-5.8S-ITS2

LUZULA

 

 

 

 

 

 

   MARLENIA

L. elegans Lowe

EU523158

AY437928

AY216648

—

—

   LUZULA

 

 

 

 

 

 

       Anthelaea

L. canariensis Poir.

EU523159

AY437929

AY216655

AY973516

AY973498

 

L. luzuloides (Lam.) Dandy & E. Eillm.

EU523160

—

—

 

 

 

L. nivea (Nath.) DC.

EU523161

AY437930

AY216650

—

—

 

L. purpureosplendens Seub.

EU523162

AY437931

AY216654

—

—

 

L. sylvatica (Huds.) Gaudin

EU523163

AY437932

AY216637

—

—

       Atlanticae

L. atlantica Braun-Blanq.

—

DQ099455

AY216639

—

—

       Nodulosae

L. nodulosa (Bory & Chaub.) E. Mey.

EU523164

AY437933

AY216636

AY973517

AY973499

       Diprophyllatae

L. divaricata S. Watson

—

AY437934

—

—

—

 

L. glabrata (Hoppe) Desv.

EU523165

AY437935

AY216644

—

—

 

L. parviflora (Ehrh.) Desv.

—

—

U49228

—

—

 

L. wahlenbergii Rupr.

EU523166

AY437936

AY216649

AY973518

AY973500

       Alpinae

L. peruviana Desv.

—

AY437937

—

—

—

 

L. racemosa Desv.

—

AY437938

—

—

—

 

L. spicata (L.) DC. s. str.

EU523167

AY437939

AY216645

—

—

 

L. mendocina Barros

—

DQ099456

—

—

—

 

L. traversii (Buchenau) Cheesem. s str.

—

AY437940

AY216635

—

—

     Thyrsanochlamydeae

L. arcuata (Wahlenb.) Sw.

—

AY437941

AY216651

—

—

 

L. kjellmaniana Miyabe & Kudo

—

AY437942

AY216633

—

—

 

L. subcongesta (S.Watson) Jeps.

—

—

AY216657

—

—

       Luzula

L. campestris (L.) DC. s. str.

EU523168

AY437943

AY216652

—

—

 

L. comosa E. Mey.

—

DQ099457

—

—

—

 

L. divulgata Kirschner

EU523169

AY437944

AY216646

—

—

 

L. meridionalis H.Nordensk.

—

—

AY216641

—

—

 

L. rufa Edgar

EU523170

AY437945

AY216642

—

—

 

L. sudetica (Willd.) Schult.

EU523171

AY437946

AY216647

AY973519

AY973501

   PTERODES

L. acuminata Raf.

AY1245212

AY4379471

AY2166561

—

—

 

L. johnstonii Buchenau

—

—

AY216634

—

—

 

L. luzulina (Vill.) Racib.

—

—

AY216632

—

—

 

L. pilosa (L.) Willd.

—

AY437948

AY216653

—

—

JUNCUS

 

 

 

 

 

 

   JUNCUS

 

 

 

 

 

 

       Juncus

J. cooperi Engelm.

EU523172

DQ099458

—

—

—

 

J. kraussii Hochst. in C.Krauss s. str.

—

—

AY216609

—

—

 

J. maritimus Lam.

EU523173

AY437949

AY216629

—

—

       Caespitosi

J. capitatus Weigel.

EU523174

DQ099459

—

—

—

 

J. tiehmii Ertter

—

DQ099460

—

—

—

 

J. uncialis Greene

—

DQ099461

—

—

—

       Graminifolii

J. capensis Thunb.

EU523175

AY437950

AY216616

AY973520

AY973502

 

J. covillei Piper s. str.

EU523176

AY437951

AY216606

—

—

 

J. lomatophyllus Spreng.

EU523177

AY437952

AY216617

AY973521

AY973503

 

J. longistylis Torr.

EU523186

—

—

—

—

 

J. prominens (Buchenau) Miyabe & Kudo

EU523178

DQ099465

—

—

—

 

J. regelii Buchenau

EU523179

DQ099466

—

—

—

 

J. repens Michx.

—

—

AY216627

—

—

       Stygiopsis

J. allioides Franch.

EU523180

—

—

—

—

 

J. amplifolius A. Camus

EU523181

—

—

—

—

 

J. bengalensis Kunth

EU523182

—

—

—

—

 

J. biglumis L.

EU523183

AY437953

—

—

—

 

J. castaneus Sm.

EU523184

AY437954

AY216623

—

—

 

J. gracilicaulis A. Camus

EU523185

 

 

—

—

 

J. himalensis Klotzsch

—

—

AY216628

—

—

 

J. membranaceus Royle

EU523187

—

—

—

—

 

J. minimus Buchenau

EU523188

—

—

—

—

 

J. sikkimensis Hook. f.

EU523189

—

—

—

—

 

J. potaninii Buchenau

EU523190

—

—

—

—

 

J. przewalskii Buchenau

EU523191

—

—

—

—

 

J. stygius L.

EU523192

AY437955

AY216610

AY973522

AY973504

 

J. thomsonii Buchenau

EU523193

—

—

—

—

 

J. triglumis L.

EU523194

AY437956

AY216605

—

—

       Iridifolii

J. ensifolius Wikstr.

EU523195

AY437957

AY216611

—

—

 

J. oxymeris Engelm.

EU523196

AY437958

AY216621

AY973523

AY973505

 

J. polycephalus Michx.

—

—

AY216626

—

—

 

J. xiphioides E. Mey.

EU523197

AY437959

AY216624

—

—

       Ozophyllum

J. alpinoarticulatus Chaix.

EU523198

AY437960

—

—

—

 

J. articulatus L. s. str.

—

AY437961

AY216614

—

—

 

J. bulbosus L.

EU523199

AY437962

AY216622

AY973524

AY973506

 

J. nevadensis S. Watson

—

AY437963

AY216601

—

—

 

J. subnodulosus Schrank

EU523200

AY437964

AY216630

—

—

 

J. oxycarpus E. Mey. ex Kunth

—

—

AY216631

—

—

   AGATHRYON (=POIOPHYLLII)

 

 

 

 

—

—

       Tenageia

J. bufonius L.

EU523201

AY437965

AY216615

—

—

 

J. turkestanicus V. Krecz. & Gontsch.

EU523202

AY437966

—

—

—

       Steirochloa

J. capillaceus Lam.

—

AY437967

AY216604

—

—

 

J. compressus Jacq.

EU523203

AY437968

AY216625

AY973525

AY973507

 

J. dichotomus Elliott

—

DQ099467

AY216607

—

—

 

J. gerardii Loisel.

—

AY437969

AY216613

—

—

 

J. imbricatus Laharpe

EU523204

—

AY216602

—

—

 

J. monanthos Jacq.

EU523205

DQ099464

—

—

—

 

J. squarrosus L.

EU523206

AY437970

AY216619

—

—

 

J. trifidus L.

EU523207

AY437971

AY216618

AY973526

AY973508

       Juncotypus

J. arcticus Willd.

EU523208

AY437972

—

—

—

 

J. balticus Willd. s. str.

EU523209

AY437973

AY216620

—

—

 

J. conglomeratus L.

EU523210

AY437974

—

—

—

 

J. drummondii E. Mey.

—

AY437975

—

—

—

 

J. effusus L. s. str.

EU523211

AY437976

AY216612

AY973527

AY973509

 

J. filiformis L.

EU523212

AY437977

—

—

—

 

J. hallii Engelm.

EU523213

DQ099462

AY216603

—

—

 

J. jacquinii L.

EU523214

—

—

—

—

 

J. mexicanus Willd ex Schult. & Schult.f.

EU523215

DQ099463

—

—

—

 

J. parryi Engelm.

—

AY437978

AY216600

—

—

 

J. vaginatus R.Br.

—

—

AY216608

—

—

FORSKALINA

J. subulatus Forssk.

EU523216

—

—

—

—

ROSTKOVIA

Rostkovia magellanica (Lam.) Hook.f.

—

AY437979

U49224

AY973530

—

MARSIPPOSPERMUM

Marsippospermum grandiflorum (L. f.) Hook.f.

EU5232172

AY9735352

U492261

AY973534

AY973515

DISTICHIA

Distichia muscoides Nees et Meyen

EU5232182

AY9735372

U492271

AY973531

—

 

D. acicularis Balslev & Laegaard

—

AY9735382

AJ4199441

AY973533

AY973513

PATOSIA

Patosia clandestina (Phil.) Buchenau

EU5232192

AY9735362

U492251

AY973532

AY973514

OXYCHLOË

Oxychloë andina Phil.

—

AY437980

AY660587

AY973529

—

 

Oxychloë bisexualis Kuntze

EU523220

AY437981

AY660584

AY973528

AY973510

 

Oxychloë castellanosii Barros

—

—

AY660585

—

AY973512

 

Oxychloë haumaniana (Barros) Barros

—

—

AY660586

—

AY973511

THURNIACEAE

 

 

 

 

—

—

PRIONIUM

Prionium serratum (L. f.) Drège ex E. Mey.

AY1245272

AY3441552

U492231

—

—

THURNIA

Thurnia polycephala

AY124532

—

AY123239

—

—

 

Thurnia macrocephala

—

—

AF036881

—

—

 

 

Objectives

Published Work and List of samples

Main topics of interest and Onging Projects

Phylogeny Conclusion

Group Participants

Juncaceae Literature